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Two medicines, side by side

Azathioprine vs methotrexate

Azathioprine and methotrexate are both labeled for rheumatoid arthritis. Drugs@FDA records approvals of azathioprine since 1968 and of methotrexate since 1953. Pharmacies paid $0.124 per azathioprine 50 mg tablet and $0.158 per methotrexate 2.5 mg tablet (NADAC, October 7, 2026); the strengths differ, so the two prices are not like for like. Methotrexate's other strengths are brand-only: $21.76 per mL (Xatmep 2.5 mg/mL oral solution). In FDA's classes, azathioprine is a purine antimetabolite and methotrexate a folate analog metabolic inhibitor.

Check it at the source: the azathioprine FDA label on DailyMed (effective November 8, 2025); the methotrexate FDA label on DailyMed (effective May 27, 2026).

Highlights of the azathioprine record

Azathioprine (Imuran) · label of November 8, 2025

Boxed warning

MALIGNANCY Chronic immunosuppression with IMURAN, a purine antimetabolite increases risk of malignancy in humans. Reports of malignancy include post-transplant lymphoma and hepatosplenic T-cell lymphoma (HSTCL) in patients with inflammatory bowel disease. Physicians using this drug should be very familiar with this risk as well as with the mutagenic potential to both men and women and with possible hematologic toxicities. Physicians should inform patients of the risk of malignancy with IMURAN.

Used for

From the label: indications

IMURAN is indicated as an adjunct for the prevention of rejection in renal homotransplantation. It is also indicated for the management of active rheumatoid arthritis to reduce signs and symptoms. Renal Homotransplantation: IMURAN is indicated as an adjunct for the prevention of rejection in renal homotransplantation. […]

On the market

Earliest approval on file
March 20, 1968
Generic labelers
17 labelers
Pharmacy cost
$0.124 per tablet

Supply and safety

Shortage
No current entry
Recalls
1

Highlights of the methotrexate record

Methotrexate (Rasuvo) · label of May 27, 2026

Boxed warning

EMBRYO-FETAL TOXICITY, HYPERSENSITIVITY REACTIONS, SEVERE ADVERSE REACTIONS, and RISK OF MEDICATION ERRORS Methotrexate Tablets can cause embryo-fetal toxicity, including fetal death. For non-neoplastic diseases, Methotrexate Tablets is contraindicated in pregnancy. For neoplastic diseases, advise females and males of reproductive potential to use effective contraception [see Contraindications (4), Warnings and Precautions (5.1), Use in Specific Populations (8.1 , 8.3) ].

Used for

From the label: indications

Methotrexate tablets is a dihydrofolate reductase inhibitor indicated for the: Treatment of adults and pediatric patients with acute lymphoblastic leukemia (ALL) as part of a combination chemotherapy maintenance regimen ( 1.1 ) Treatment of adults with mycosis fungoides ( 1.1 ) Treatment of adults with relapsed or refractory non-Hodgkin lymphoma as part of a metronomic combination regimen ( 1.1 ) Treatment of adults […]

On the market

Earliest approval on file
December 7, 1953
Generic labelers
29 labelers
Pharmacy cost
$0.158 per tablet

Supply and safety

Shortage
In shortage
Recalls
8

Source: FDA drug labels via openFDA (Azathioprine label of November 8, 2025, Methotrexate label of May 27, 2026); NDC Directory, Drugs@FDA, NADAC, FDA shortages and recalls (October 8, 2026)

How do azathioprine and methotrexate differ on the record?

In FDA's classes, azathioprine is a purine antimetabolite and methotrexate a folate analog metabolic inhibitor.

Half-life, in each label's words: Azathioprine, “Maximum serum radioactivity occurs at 1 to 2 hours after oral 35 S-azathioprine and decays with a half-life of 5 hours.”; Methotrexate, “Elimination The elimination half-life of methotrexate is approximately 3 to 10 hours.”

Both labels carry a boxed warning; the records quote them.

Generics: azathioprine since 1995; methotrexate since 1979 (Drugs@FDA).

AzathioprineMethotrexate
Labeled forOrgan transplant rejection, Rheumatoid arthritisRheumatoid arthritis, Psoriasis, Leukemia, lymphoma and myeloma, Breast cancer
Pharmacologic classPurine AntimetaboliteFolate Analog Metabolic Inhibitor
How it works (label)n/aMethotrexate inhibits dihydrofolic acid reductase. Dihydrofolates must be reduced to tetrahydrofolates by this enzyme before they can be utilized as carriers of one-carbon groups in the synthesis of purine nucleotides and thymidylate.
Half-life (label)Maximum serum radioactivity occurs at 1 to 2 hours after oral 35 S-azathioprine and decays with a half-life of 5 hours.Elimination The elimination half-life of methotrexate is approximately 3 to 10 hours.
Earliest approval on file (Drugs@FDA)March 20, 1968December 7, 1953
First generic approvedMarch 31, 1995September 5, 1979
Generic labelers (NDC)17 labelers29 labelers
Pharmacy cost (NADAC, each one's most listed form; strengths differ)$0.124 per tablet (Azathioprine 50 mg tablet)$0.158 per tablet (Methotrexate 2.5 mg tablet)
12-month price change-10%-4%
Boxed warningYesYes
Shortage nowNo current entryIn shortage
Recalls recorded18
FAERS reports (a report is not proof of cause; counts follow how widely a medicine is used)89,586489,791
DEA schedulenonenone

Source: Drugs@FDA, FDA NDC Directory, CMS NADAC of October 7, 2026, FDA shortages and recalls, FAERS via openFDA (FDA files October 8, 2026)

What do the labels say about using others of their kind?

Methotrexate label, drug interactions

Oral antibiotics (including neomycin) Antifolate drugs (e.g., dapsone, pemetrexed, pyrimethamine and sulfonamides) Oral or intravenous penicillin or sulfonamide antibiotics Aspirin and other nonsteroidal anti-inflammatory drugs Highly protein-bound drugs (e.g., oral anticoagulants, phenytoin, salicylates, sulfonamides, sulfonylureas, and tetracyclines) Hepatotoxic products Proton pump inhibitors Weak acids (e.g. …

Source: FDA drug labels via openFDA

What next?

Alternatives to azathioprine
every medicine labeled for the same conditions